Identifying database from which a hit sequence came from after blastdb_aliastool
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Downloading a subset of sequences from the NCBI nucleotide database
written by Jess •
-
Local blast with multiple databases and multiple files
written by akang
-
blast against metagenome shotgun data - not getting the hits expected
written by christina •
-
BLAST multiple database against each other
written by archana.bioinfo87
-
Taxonomy information in nr database
written by navela78
-
How can I use formatted output file in the following code?
written by wowzero •
-
Local blast custom databases
written by treitlis •
-
A tool to annotate one VCF file with INFO records of another VCF taking SNP into account?
written by tsukanoffkirill •
-
Custom database for genomic data
written by A. Domingues
-
How To Differentiate Databases When Blasting From The Command Line?
written by Iván •
What does the
databaseidentifier say in the result? Original name or alias?The blast result file contains "Database: custom_db" (i.e.) the alias in the beginning of the file and the end of the file. Is this what you meant by database identifier? There is no database identifier for each hit unless I am missing to set some blast option properly.
Not sure how big the databases are but perhaps you can uniquely tag the sequence headers in the databases (
_db1/2to be able to get this information from the result.The databases are big but adding the db name in the headers seems to the only option right now. Thanks for your response.