Making a list of adjacencies

Hi,

I have two adjacency matrices like so;

    > head(a[,1:4])

      0.000000000 0.001287944 0.0009840186 0.001331908
     0.009028600 0.000000000 0.0454970255 0.086481054
     0.009351082 0.100214642 0.0000000000 0.084016084
    0.012369094 0.101991920 0.1127636027 0.000000000
     0.005782680 0.069187046 0.0926961992 0.057618739
     0.010028177 0.085836197 0.0683108590 0.115312672
    > 

> head(b[,1:4])

  0.000000000 0.003395823 0.003414964 0.003790899
 0.019616886 0.000000000 0.098057502 0.096651371
 0.021880933 0.088377908 0.000000000 0.084118997
 0.020337222 0.105928503 0.088049864 0.000000000
 0.013806135 0.072800378 0.094627229 0.085720740
 0.009753766 0.070203073 0.089240739 0.099314366
>

I want to make a list of them

But when i feed my list to a tensor gives error

    A=list(a,b)
    library(rTensor)
    G <- as.tensor(A)
cpG <- cp(G,num_components = 4)
    Error in .is_zero_tensor(tnsr) : 
      (list) object cannot be coerced to type 'double'

r factorization

• 1,426 views • link

written 8.4 years ago by zizigolu

As @Jean-Karim Heriche suggested in his tutorial, I firstly wrote my adjacency as a file in a directory, I then ran his code so

Get list of adjacency matrices

Each matrix is in a csv file

fileList <- dir(path=dataDir,pattern = ".csv")

Read all adjacency matrices into an array

A <- array(as.numeric(NA),dim=c(26,26,2)) # There are 2 matrices of size 26 x 26

for (i in 1:length(fileList)){

    A[,,i] <- as.matrix(read.delim(file.path(dataDir,fileList[i]), sep = ';', header=TRUE, row.names=1))

}

• 0 views • link

written 8.4 years ago by zizigolu

0 answers

No answers yet.