How many CPU or MEM does need to run HiC-Pro ?
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6.1 years ago
Francis ▴ 20

Hi, everyone, i am running HiC-Pro to process HiC data to study the interaction frequency of some intar-chr. But the time is too long to finish. i set the CPU of config-hicpro.txt 20 and about 60G mem, i do not know is it suitable.

Any ideas will be helpful. Thank you.

HiC;HiC-Pro;3D structure; • 1.6k views
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Depending on the scheduler you are using you may be able to check on the progress of the job. If there are files being generated/they have a recent system date then let things run. Not much more you can do.

GitHub page offers this may take several hours.

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