What is the meaning of the level in groupGO Clusterprofiler ?

I'm running Gene ontology using Clusterprofiler. but I don't know what the level is in groupGO. there is just written 'specific GO level' in manual. What is the criterion of specific GO level?

rna-seq r clusterprofiler go gene ontology

• 3,749 views • link

written 8.4 years ago by GuriGuri1565 •

See the answer to Question: levels in gene ontology (A: levels in gene ontology)

• 1 views • link

written 8.4 years ago by seidel

0 answers

No answers yet.

More posts like this

Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio)
written 11 months ago by Naveen •

hello everyone, I'm working on a transcriptome analysis of common carp (Cyprinus carpio) and have a question regarding Gene Ontology (GO) enrichment. After running DESeq2, …
Gene Set Enrichment Analysis, KEGG and over representative analysis
written 4.9 years ago by synat.keam •

Dear Seniors, I am looking to perform GSEA, KEGG and Over Representative Analysis. I found ClusterProfiler interesting and had ago with "GO classification" including **groupGo** …
Using ClueGO without generating a network
written 5.3 years ago by henriquechapola •

I'm making a gene ontology analysis using ClueGO, but I'm not interested in the network. I just want the results table. I read the manual, …
clusterProfiler and enrichplot: visualising groupGO results with individual genes and their fold ch…
written 5.4 years ago by Ali May •

Hi, I'm using the `groupGO` command in `clusterProfiler` to group a subset of (e.g. significantly DE) genes under GO terms. I would like to visualise …
Why enrichGO does not return any enrichment terms?
written 5.5 years ago by Firingam •

Hi! I'am having some issues with clusterProfiler::enirchGO. I provide down below a partial list of my genes in order for you to have the possibility …
Is there a package for ORA where I can supply my own gmt files?
written 6.5 years ago by Gabriel

I am looking to do standardized Gene Ontology analysis based on a cutoff and Overrepresentation Analysis(ORA, not GSEA). For this, I've been using gprofiler, etc. …
How do transcript-level gene ontology
written 7.8 years ago by lkianmehr

Hello, I do not know exactly how do I with transcript ensemble ID to enter gene ontology. actually, at first, convert all transcript ensemble id …
ClusterProfiler Ontology Bar plotting
written 8.4 years ago by kalyanimeha •

I am doing gene ontology enrichment with cluterprofiler package, and I got the result but when I plotting barplot (10000 descriptions) it's difficult to read …
Error while running clusterProfiler
written 8.7 years ago by bioinfo8

Hi, I am trying to run clusterProfile after installing all dependencies and when I run: ggo <- clusterProfiler::groupGO(gene = gene, OrgDb = org.db, ont = …
Tool: clusterProfiler: an R package for comparing biological themes among gene clusters
written 10.1 years ago by Guangchuang Yu

The `clusterProfiler` package implements methods to analyze and visualize functional profiles of genomic coordinates (supported by ChIPseeker), gene and gene clusters. **Homepage**: https://guangchuangyu.github.io/software/clusterProfiler/ **Documentation**: https://guangchuangyu.github.io/software/clusterProfiler/documentation/ …