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Proxy variants by GRCh37 position

I was wondering if anyone could suggest a tool to get proxies using chromosomal positions (GRCh37); also get the positions of proxies as output. There seems to be few using rsIDs but not the positions.

snp
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updated by andrew.j.skelton73 andrew.j.skelton73 • written by A. Blizzard • A. Blizzard

What do you mean by "proxies"?

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written by Ram Ram

In high LD, when using a specific tool one usually can specify D-prime or R-squared (often >= 0.8).

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written by A. Blizzard • A. Blizzard

1 answer

How about LDProxy? The other tools within the LDLink (the other tabs), help to answer similar LD orientated questions.

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written by andrew.j.skelton73 andrew.j.skelton73

Thanks. I have about half a million variants, I think I will just use Ensembl's Rest API and get the positions from bioMart.

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written by A. Blizzard • A. Blizzard

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