Enrichment of gene set with enrichR
How to create Bar Plot and Dot plot for a different function of the gene with help of enrichR. This is the command I am using for the result.
> dat=read.delim("Down_Li+8Gy.txt", header=FALSE)
> my_genes3=as.character(dat$V1)
> enriched <- enrichr(my_genes3, dbs
Uploading data to Enrichr... Done.
Querying GO_Molecular_Function_2015... Done.
Querying GO_Cellular_Component_2015... Done.
Querying GO_Biological_Process_2015... Done.
Querying KEGG_2016... Done.
Parsing results... Done.
> printEnrich(enriched, "output3.txt" , sep = "\t", columns = c(1:9))
> DownLi8GyBP<- enriched[["GO_Biological_Process_2015"]]
> DownLi8GyCC<- enriched[["GO_Cellular_Component_2015"]]
> DownLi8GyMF<- enriched[["GO_Molecular_Function_2015"]]
> DownLi8GyKEGG<- enriched[["KEGG_2016"]]
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WouterDeCoster
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bikash2510 •
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What have you tried?
I am not getting any function regarding box plot, dot plot i enrichR.
How did you try searching for one?
I added code markup to your post for increased readability. You can do this by selecting the text and clicking the 101010 button. When you compose or edit a post that button is in your toolbar, see image below:
How to solved this problem?..This code is not avilable..
What code are you referring to? WouterDeCoster's comment is referring to an option available on the post editor here, not to a piece of code that pertains to the problem at hand. I updated his comment and made sure the image that was there earlier is now available again.