SNPTEST in mac
Hi everyone. I've received impute2 files in gz format and I want to running in SNPTEST
I use the next command
./snptest -data /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.gen /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.sample -summary_stats_only -o /example/ex.out
And this is the error message
Welcome to SNPTEST v2.5.2 (revision 675f81d8832d51b2d556fd962912b2ca96cfa6c6)
© University of Oxford 2008-2015
https://mathgen.stats.ox.ac.uk/genetics_software/snptest/snptest.html
Read LICENCE file for conditions of use.
==============
Data Files :
-gen files : /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.gen
-sample files : /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.sample
Tests :
(no tests specified)
-method none
reading sample exclusion lists
Inspecting data (this may take some time)...
!! Error detected in source "/Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.sample".
!! Quitting.
libc++abi.dylib: terminating with uncaught exception of type genfile::ResourceNotOpenedError: genfile::ResourceNotOpenedError
Abort trap: 6
I also tried this command
./snptest -data /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.gen -summary_stats_only -o /example/ex.out
But I have this error message
ERROR: -data must be supplied an even number of values.
Any suggestions to solve this??? Thanks!!
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