BWA error [bwt_restore_sa]

Index FASTA genome:

bwa index hg19.fasta

hg19.fasta hg19.fasta.amb hg19.fasta.ann hg19.fasta.bwt hg19.fasta.pac

Aligning:

bwa mem hg19.fasta IonXpress_001.fastq > IonXpress_001.sam

[bwt_restore_sa] fail to open file 'reference/hg19.fasta.sa' : No such file or directory

next-gen

• 1,920 views • link

updated 8.4 years ago by Arindam Ghosh

• written 8.4 years ago by sarahkhanishere •

1 answer

Please recheck for the location of the file reference/hg19.fasta.sa.

• 0 views • link

written 8.4 years ago by Arindam Ghosh

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