This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Subset DGEList by treatment-specific expression

Hi all,

I am working with expression data and comparing males and female gene expression on two different diets (using edgeR). The first thing I would like to do is separate my DGEList element into three components.

  • genes that are only expressed in females
  • genes that are only expressed in males
  • genes that are expressed in both sexes

Most genes are expressed in both sexes, but some are only in males while others are only in females. I would like to analyse these types of genes separately... and how these different gene seta respond to diet.

thanks,

cpm(dgList)>0.5

rna-seq edger
• 1,885 views • link
written by fcamus • fcamus

0 answers

No answers yet.

Log in to answer this question.

More posts like this