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How to have frequency displayed on the Y axis in weblogo

I am using weblogo http://weblogo.berkeley.edu/logo.cgi to try and generate weblogos with frequency (upto 100) displayed on Y axis, I assumed checking the box for frequency plot would do it but I get no display on the Y axis How can it be changed to display frequency on Y axis ?

weblogo
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updated by Alex Reynolds Alex Reynolds • written by Aishwarya Kulkarni Aishwarya Kulkarni

did you try checking the "frequency plot" box on the options?

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written by Robert W Link • Robert W Link

1 answer

Within weblogo, add the --units probability argument (or select probability from the Units pull-down menu from the web interface) and edit the figure with Illustrator (PDF/SVG) or Inkscape (SVG) to modify the y-axis, changing fractional probability ([0,1]) to a percentage ([0,100]) by multiplying fractional probability by 100. Refer to the manual for more detail.

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written by Alex Reynolds Alex Reynolds

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