Hi All,
I have a list of proteins names and their COG accession number, generated from a metaproteomics software. How could I convert them to gene names or symbols?
Here an example of my list:
COG3968 Glutamine synthetase type III(3012)
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit(4241)
COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase(1154)
COG0480 Translation elongation factor EF-G, a GTPase(5433)
COG0090 Ribosomal protein L2(1921)
COG3968 Glutamine synthetase type III(3012)
COG0228 Ribosomal protein S16(1540)
COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase(2333)
Anyone could help please?
Thanks
•
written
by
ShahdEzzeldin •
1 answer
You can use e.g. UniProt's ID mapping (here). You need to choose "eggNOG" in the "From" drop-down menu and can paste your ID list into the upper field.
You can also use the eggNOG database itself. But there I found no batch look-up.
I guess there are plethora of similar sides
Cheers,
Michael
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