DNA motif search based on nucleotide density
Hi,
I'm trying to find all regions in the human genome (hg38) which are min 100 bp in length and have a certain percentage of 1 or 2 given nucleotides e.g. G>30% & T>30% (in the same region irrelevant of the sequence order). Does anybody know if there is a tool for this?
Best, Helene
• 977 views
•
link
written
by
helene_gylling •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Designing unique DNA sequence set
written by chansik •
-
Genome Size Estimation with Jellyfish and Genome Scope is Unexpectedly Small
written by dk0319 •
-
Removing specified range of bases from middle of the contigs and creating new sequences
written by Inquisitive8995
-
How split regions in half to get at most 1000 bp length?
written by star
-
design primers across the target sequence
written by APJ •
-
Which one do I need to consider single-read or multi-read mappability bigwig file for creating mous…
written by bioinforesearchquestions
-
Designed primers with 3 bp mutations (codons) how to validate/visualize them?
written by morovatunc
-
sequence alignment using degenerated nucleotide codes as reference sequence
written by ycding •
-
Metagenomics data: trimming and decontamination
written by alesssia
-
Extract surrounding genome sequences given certain locations using R
written by DVA
