Duplicated Gene ID in gene_exp.diff file
Hello
I have run Cufflinks suit to get differentially expressed genes. I used annotation file for this analysis.
In "gene_exp.diff" file I have found a duplicated gene id (HORVU1Hr1G021800 : It is for barley) with same location but different FPKM values.
How can I interpret such issue?
Any help in this case is appreciated.
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Can you use
grepto extract the information for this transcript from the GTF that you're using?For example:
Cufflinks hasn't been updated in a couple of years and doesn't appear to be maintained. Do you really want to use it for your analysis?
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