Hello, Although this is a duplicate question from another posting, the previous post did not have any responses.
Dear biostars:
I'm doing local ancestry estimations for GWAS data using the LAMP-LD software, I just got the results, which are ranges of ancestry across each chromosome per individual. This is small example of the output for a given chromosome:
00:1935 01:1981 02:50531 00:50937
1: Native american ancestry(red)
0: European ancestry (blue)
2: African ancestry (orange)
00 means that both haplotypes comes from european ancestry, 01 half european and half Native american, 02 half european and half african. The numbers after the semicolon are the number of variants on each haplotype.
I was looking in the web but I haven't found any tool (online or script like in R) that can take that input format and draw a plot.
I'll appreciate if you can give some advice.
•
written
by
genomics Newbie •
0 answers
No answers yet.
Log in to answer this question.
When people want a plot, they have usually seen some other plot somewhere and at some other time. Have you any idea about what plot you actually want?
A simple bar- and pie chart chart would instantly show the respective distribution between the different ethnic backdrops. You could also use the Google map interface in R in order to plot points on the map, like, labels for each variant.