I am trying to download a cancer dataset from EGA repository. I have ICGC access. So when I try to download the dataset using the command ./icgc-get download -m da532069-82e5-49c3-b903-ac65eb45a03c
But I get the following error:
Traceback (most recent call last):
File "icgcget/cli.py", line 417, in <module>
File "icgcget/cli.py", line 413, in main
File "click/core.py", line 716, in __call__
File "click/core.py", line 696, in main
File "click/core.py", line 1060, in invoke
File "click/core.py", line 889, in invoke
File "click/core.py", line 534, in invoke
File "click/decorators.py", line 17, in new_func
File "icgcget/cli.py", line 271, in download
File "icgcget/commands/download.py", line 132, in download
File "icgcget/commands/download.py", line 227, in client_download
File "icgcget/clients/ega/ega_client.py", line 99, in download
OSError: [Errno 2] No such file or directory: '/icgc/mnt'
Failed to execute script cli
Where am I going wrong? Thanks in advance for your help!
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Do you have anything under
/icgcdirectory ?ls /icgc?I created a folder named icgc to download the files from EGA. Is that a problem? The folder is empty
Program is looking for a directory called
icgc/mnt. Are you closely following the directions for download? They should have a clue of why that directory is expected to be there.Did u follow everything?