bowtie inspect error
We inserted this command bowtie-inspect -s mm9 and got this error Could not locate a Bowtie index corresponding to basename "mm9" Command: bowtie-inspect --wrapper basic-0 -s mm9 what is it mean?
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It means that mm9.1.bt2 and the other indexes for that genome aren't in your current directory. You probably want bowtie2-inspect /path/to/index/files/mm9.
Also, I assume you're actually using bowtie2, rather than bowtie (if not, stop doing that).
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thank you dear Devon Ryan I get my answer
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Use the complete path to the index file with exact genome version suffix.