Fastq file Quality control in R
Hello,
I have converted my .sra files using fastq-dump. Then I wanted to check the quality of my data using the recently developed "Rqc" tool. https://bioconductor.org/packages/devel/bioc/vignettes/Rqc/inst/doc/Rqc.html
I followed the steps below but got an error. 1. > library(Rqc) 2. > folder <- system.file(package="Rqc","SRR1552444.fastq") 3. > rqc(path = folder, pattern = ".fastq")
ERROR: Error in .local(x, sample, n, group, top, pair, ...) : Input files were not provided.
I am REALLY NEW to coding and I run these commands blindly so please excuse me if it's a too basic question.
Efraim
• 406 views
•
link
1 answer
I think I solved my problem! :)
• 0 views
•
link
Log in to answer this question.