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Fastq file Quality control in R

Hello,

I have converted my .sra files using fastq-dump. Then I wanted to check the quality of my data using the recently developed "Rqc" tool. https://bioconductor.org/packages/devel/bioc/vignettes/Rqc/inst/doc/Rqc.html

I followed the steps below but got an error. 1. > library(Rqc) 2. > folder <- system.file(package="Rqc","SRR1552444.fastq") 3. > rqc(path = folder, pattern = ".fastq")

ERROR: Error in .local(x, sample, n, group, top, pair, ...) : Input files were not provided.

I am REALLY NEW to coding and I run these commands blindly so please excuse me if it's a too basic question.

Efraim

r rqc rna-seq

1 answer

I think I solved my problem! :)

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