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Bowtie exits with error line 341 on SSPACE v2

Building Bowtie index for contigs Bowtie-build error; -1 at sspace_basic/bin/ExtendOrFormatContigs.pl line 341.

Any help would be much appreciated!

Line 341 for reference,

system("bowtie-build $contigFile bowtieoutput/$bowtieout --quiet --noref") == 0 || die "\nBowtie-build error; $?"; # returns exit status values

sspace assembly bowtie perl
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written by freuv • freuv

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