clarification of annotation columns in dbSNP database
Hello every one. I would be very grateful if someone could help me with the following questions regarding SNPs.
I have two SNPs one in BRCA1 (rs56158747) and one in BRCA2 (rs206076).
For rs56158747 the columns [SNP to Chr is Rev], [Contig to Chr is Fwd], [Contig allele is G], [SNP to RefSeqGene is Fwd] and [SNP to mRNA is Fwd]. However these columns are different for SNP in BRCA2.
I read the help from dbSNP to understand what these columns mean but got more confused. Can someone explain them to me. Please note that BRCA1 is located in the opposite direction than the BRCA2. Thank you very much!
• 1,213 views
•
link
written
by
fabbaszadeh •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Problem finding SNPs from xml file (from dbSNP) in dbSNP
written by jerox80197 •
-
Transcription of both sense and antisense strands in opposite directions
written by fabbaszadeh •
-
Forum: clarification of annotation columns in dbSNP database
written by fabbaszadeh •
-
Align short reads to multifasta reference - cant see in IGV
written by kanacska •
-
creating for loops in R for nGS data
written by Ana
-
How to obtain ancestral alleles based on Hg19 genome coordinates?
written by devenvyas
-
How to convert Affymetrix SNP IDs to dbSNP rs SNP names
written by philipovic •
-
Why some SNP databases don't contain the strand information
written by camelbbs
-
doubts about genome assembly and ensembl
written by palliyath91 •
-
Dbsnp132 1000Genomes Vcf File Info Field: Bitfield Structure
written by Biomed
please post the example data instead of describing the data.