calculate Per variant Heterozygosity from VCF file
Hi everybody,
Is there any way to calculate the per variant heterozygosity (i.e. number of 1/0 or 0/1 genotypes observed at given variant site for set of individuals in VCF file) from VCF file?
I knew per individual heterozygosity can be calculated by --het tag from VCFtools
Thanks!
-sohail
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