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Visualization software for large variations

Hi,

Is there good visualization software for large variations? I am aware of IGV but i am having difficulty in estimating the large variations. Also what is insert size and how does it correlate to the size of the deletion/insertion?

Thanks

alignment next-gen sequencing
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written by rse rse

Thanks, but i have to do from alignment data (.bam files)

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written by rse rse

3 answers

Circos

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written by cpad0112 cpad0112

Yes, you can use junction files obtained along with alignment files by using available alignment tool. After that you can import junction files for obtaining Circos plot by using Circos software: http://circos.ca/software/

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written by Ram Ram

Ok, will try. Thank you

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written by rse rse

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