Fold recognition program from pbd file only

How can I find the frequency of the recognition sites found in the genome?
written 3.6 years ago by zpl015 0

Hi all, Given that the restriction enzymes are Pstl and Mspl, and their recognition sequences are CTGCA^G and C^CGG, respectively, I would like to find …
Enrichment Analysis in DAVID
written 6.4 years ago by ek699 1

Hi, I have been working on the enrichment analysis on mouse RNA-seq data (mm10) I have been trying to upload my expressed gene file (about …
protein pathway analysis software or tools
written 6.9 years ago by yueli7 25

Hello, Anyone know any software that can analysis protein pathway? Just like: GProX, a User-Friendly Platform for Bioinformatics Analysis and Visualization of Quantitative Proteomics Data …
How to edit a google drive URL for upload to ensembl browser?
written 9.2 years ago by xavisebastia96 0

Hi everyone! My name is Xavi, I am a bioinformatic working in prostate cancer and I am trying to upload a BAM file to the …
Use BLAST's search on your own FASTA?
written 9.4 years ago by orlando.wong 6

Hello biostars, I have a FASTA file of about 300 kbp & I have several sequences (400 bp - 800 bp) that I want to …
Developing a web application-- What is the best way to allow for FASTA file upload, and then runnin…
written 10.6 years ago by kbun 1

<p>Currently developing a small web pipeline for miRNA-seq analysis, using Python and Flask.</p> <p>I want the user to be able to upload a FAFSA file, …
Where are the mammoth's ORFs?
written 11.4 years ago by cdsouthan 192

Not sure if anyone from the Swedish Museum of Natural History is on this forum but does anyone know any plans to process the bam …
Convenient way to visualise a collection of genomic locations
written 11.5 years ago by Saulius Lukauskas 54

Is anyone aware of a tool that would allow me to: 1. upload a list of genomic locations, say a BED file. 2. go through …
How to I convert 23andMe Raw Genome to GenBank or FASTA?
written 12.3 years ago by someashole 9

I used 23andMe to download my raw genome. I have it in a .txt file but you can't use the format for real bio programs. …
How To Upload Repeat Mask Fasta File On Igv (Integrative Genomics Viewer)
written 14.5 years ago by Hamilton 29

<p>Using IGV, I am trying to upload repeat mask fasta file with extension .out or .align as well as identified peaks of chipseq TF data …