This is a test version of Biostars. For the public version, visit https://www.biostars.org.
how can I get supporting evidence for each transcript in Ensembl?

Hi,

Is there any way to get supporting evidence for each transcript in Ensembl?

I can't find this in Biomart ?

thanks

biomart supporting evidence ensembl
• 2,119 views • link
written by mohammadhassanj mohammadhassanj

1 answer

The supporting evidence is available for each transcript, if you go to Supporting evidence on the transcript page. These data are not available in BioMart. If you're looking to get these data on a large scale, you would need to look at using our Perl API, or querying the MySQL tables.

I will close your ticket on the Ensembl helpdesk and continue any further correspondence here.

• 0 views • link
written by Emily Emily

Thanks, Can you tell me what's the relavant tables (supporting_evidence) name?

• 0 views • link
written by mohammadhassanj mohammadhassanj

Hi, Among the following "analysis_id" list in the "dna_align_feature" table , which one of them are considered in calculation of number of exon supporting features?

{'14','20','8165','8356','8357','8361','8364','8366','8372', '8373','8385','8416','8442','9'}

for examlpe, greatest number of exon supporting feature in this result page is 21

thanks

• 0 views • link
written by mohammadhassanj mohammadhassanj

Log in to answer this question.

More posts like this