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6.3 years ago
hemantkiitg
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How to find Human-Mouse othologs from Ensembl BioMart and also how to obtain those sequences.
How to find Human-Mouse othologs from Ensembl BioMart and also how to obtain those sequences.
BioMart will allow you to get the sequences for the orthologues if you combine two queries. There are instructions on how to do this here: http://www.ensembl.org/info/data/biomart/biomart_combining_species_datasets.html
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I found a few posts in Biostars and 1 article.
Finding a orthologous genes between human and mouse along with percent alignment?
Homologous gene matching between mouse and human
Identifying orthologous exons between human and mouse
mouse exome sequencing : disease gene prioritization?
Retrieving Dn Or Ds From Ensembl Using Biomart
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5074520/pdf/pcbi.1005170.pdf
Look at UCSC.
Mouse Sequence Compared To Human Sequence
How to get mouse-human homologues table from UCSC?
What are the human and mouse reference genome (hg19, mm9) based on IGV?
To download cds see Ensemble ftp site, mentioned in the post below:
How can i retrieve all cds from a ensembl genetree?