Entering edit mode
6.5 years ago
dieter
•
0
Hello all, I set up an analysis with Mr bayes with a DNA partition and an indel-partition (binary) I obtained from Fastgap. I set MrBayes as suggeted in the manual (here example):
Format datatype=mixed(dna:1-1000,restriction:1001-1200)
and for the Indel-partition:
lset app=(2) coding=variable rates=gamma
2 questions:
a) How do I set the statefreqpr for the indel-partiton right? I used statefreqpr=fixed(equal)
b) Should I set ratepr=variable when I use indel-partitions mixed with DNA partitiond (these contain non-coding and sometimes also protein-coding (codon) regions)
Thanks for your help All the best Dieter
