Thank you for pointing that out. Makes perfect sense.
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I'm defining exon and intron positions using the RefSeq table from UCSC. The raw table is formatted as such
CHROM Strand Transcription-Start Transcription-End Coding-Start Coding-End ....
I've noticed for this transcript (hg38 RefSeq) NM_001304569.1 the transcription start and coding start positions are the same
chr10 + **100735708** 100829941 **100735708** 100827619
Does this indicate that there is no 5'UTR?
NCBI page for this accession number includes the following notes.
##RefSeq-Attributes-START##
inferred exon combination :: based on alignments, homology
##RefSeq-Attributes-END##
COMPLETENESS: complete on the 3' end.
That appears to imply that the transcript may not be complete on the 5'-end.
Thank you for pointing that out. Makes perfect sense.
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