thanks , but is there any open source somatic caller ?
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how to find somatic variant with single bam file by samtools ?
thanks in advance how to find somatic variant with single bam file by samtools ?
hii i have one bam file and i want to call somatic variant by samtools. what will be command ?
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Anop Singh Ranawat •
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Anop Singh Ranawat •
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Here is the workflow suggested by the samtools folks for variant calling. You'll note that this is not specifically for somatic variant calls, since the samtools suite is a more generic variant caller.
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