An overlap?
A GO term overlap you mean?
What a great database you linked to! Didn't find that one when googling. Thanks!
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Find all nuclear genes the mRNA of which binds to the CLUH protein for transport to mitochondria?
Hello!
I need to find all nuclear genes (up to more than a thousand) that after transcription bind to proteins like CLUH, and are then transported to the ribosomes located near the mitochondria.
I've googled mitochondria databases but no luck. I've sent some e-mails but no luck there either.
Does anyone have any idea of how to tackle this? It is imperative that this is doable, or I won't be able to write my master's thesis. :[
Big thanks in advance!
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1 answer
There are ~1500 nuclear genes related to mitochondria https://mseqdr.org/mb.php?url=genes.php
If you can come up with a GO term or some other gene set to describe your binding proteins of interest an overlap would be easy to generate.
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Take a look at this paper and check the supplemental materials.
Nice find, thank you!
They have a list of the first 100 CLUH-related genes, but there might be more - and that list is from mice, rather than humans. I forgot to mention that I'm looking for human genes only.
I am not sure about the three tables. Do they list the significantly CLUH-associated genes? So not a complete list, then?