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Batch retrival of fasta sequences based on pfam (interpro) identifier

Hi,

i have dozens of pfam identifiers. I want to get all protein sequences (fasta) containing specific domain (pfam identifier). I know how to do it one by one but is there a way to do it all at once in batch? Thanks a lot for your help! Best

sequence

1 answer

Read this post and try NCBI Batch Entrez or biomaRt or possibly bioperl EUtilities

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