Parente2 vs IBD-Groupon vs MCMC_IBDfinder: identity by descent (IBD) inference
Hey my colleagues,
Which algorithms is the best method to be applied for IBD regions (identity by descent) inference?
SpeeDB
Parente2
IBD-Groupon
MCMC_IBDfinder
BEAGLE's fastIBD
PLINK
SNPRelate
GERMLINE
BEAGLE (fastIBD)
HaploShare
HapFABIA
GraphIBD
EMI Efficient Multiple-IBD
DASH DASH Associates Shared Haplotypes
CrypticIBDcheck
Thanks.
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Shicheng Guo
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What type of data are you working with: microarray, exome, WGS?