mummer results merging

Question

[Ric]

Hi, I splited my assembly into 200 parts (part1.fasta - part199.fasta) and ran nucmer -p test pseudochromosome-1-11.fasta part1.fasta. As result I got the following extensions:

• *.delta
• *.ntref
• *.mgaps

How should I merge the 200 results into one alignment?

Thank you in advance.

[Ric]

I think that is the solution: sed 1,2d BAFB.contigs.clean.*.delta > BAFB.contigs.clean.delta

[Ric]

I got ERROR: Could not parse delta file, BAFB.contigs.clean.delta error no: 400 with show-coords BAFB.contigs.clean.delta > Scaffold.coords