Dear experts, Could you shed some light on the choice of the clusters of genes in bulk RNAseq analysis? The mfuzz package can do cluster …

Hello everyone, I'm using Cytoscape v. 3.9.1 to visualize the results of a previously perfmored WGCNA analysis. The aim is to individuate hub genes through …

Dear all, I need to visualize the correlation between some different features in a way better than corrplot. I tried the plotVar with the pca …

So Seurat can generate ViolinPlots that illustrate differential gene expression across clusters. Example: ![Seurat DE][1] What would be the best approach to record this data …

Hi all, I have employed humann2 to do function analysis, which generated a matrix of the abundance of detailed pathways which begin with "PWY", such …

Is there anyone knows what is going on here? Never saw this before. ![enter image description here][1] [1]: https://i.ibb.co/Dw9NJ12/Picture1.png

Hello I used MASIGPRO for time course differential analysis, and ive got some plots and tables, But I to extract most Differentiated genes form it, …

Dear All, I have an excel file containing two attributes genesA and genesB , the entity in the first attribute interacts with the second. attribute. …

I use raw counts for DGE in DESeq2, edgeR etc. And I use VST for PCA and clustering. Now, I am curious about TPM. What …

Dear I need some your valuable comments on my cluster analysis as i have very little knowledge of cluster analysis. What will be the best …