what happens when blast is run with default query "-"?
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6.5 years ago
chefarov ▴ 170

I have seen cmdline blast been used like:

blastx -db my_blast_db_path -query - -evalue 1e-3 -outfmt 6 -max_target_seqs 1

What's the purpose running blastx without query? Does it do anything?

blast blastx • 1.3k views
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Entering edit mode
6.5 years ago
Asaf 10k

It reads the query from stdin - from standard input meaning terminal or redirected input such as pipe "|" or input "<"

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