thank you for that Ive added that link above
Gene synonyms/aliases - Is there a way to collect them programmatically
Hi all,
I have a list of transcription factors (TF). For each TF, I use RSImed to text mine pubmed for available publications on that TF. This involves entering the TF name as a search term. However, most TFs have been known by many aliases e.g. TEAD4.
So I have to manually enter each alias for a comprehensive search. Is there a way to get all known aliases for a gene name so that I can pass this list in a for loop to speed this process up?
EDIT: I've found the following posts extremely informative: biostars1, biostars2, biostars3, biostars4 (from mbyvcm)
Thank you all,
Kenneth
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2 answers
I've actually found an R package that does everything I need:
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