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cnvkit No x chroms in probe

Hi,

I'm running the cnvkit package (https://github.com/etal/cnvkit) on targeted amplicon seq data (chrom3). I keep running into the warning "WARNING No chrX found in probes; check the input" leading to "KeyError: 'chrx_ratio'".

If anyone has any idea what the cause of this issue may be I'd be really grateful.

Thanks.

genome

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