Hi, I want to do a core SNP alignment based phylogenetic tree for bacterial species (haploids), and I have seen different papers relating tools and …

I have a list of species from which I would like to generate a collapsed binary newick tree. I have tried in ete3, but it …

Hi all, I am new to python. I a have a phylogenetic tree and I need to reroot it at any possible branch, including terminal …

Hi, We are currently doing an screening of lactobacilli in different kinds of samples. I have isolated around 40 strains, sequenced a fragment of their …

Hi, I would like to start using ETE Toolkit (http://etetoolkit.org/) for creating a phylogenetic tree from DNA sequences from severla human individuals. I already have …

From version 2.3+, [The ETE toolkit][1] provides a set of command line [tools][1] to perform a variety of tree-related operations (i.e. tree building, tree comparison, …

<p>I have a plenty of gene trees and a species tree. I was wondering if there is any tool to detect phylogenetic conflict between gene …

[**PhylomeDB**][1] is a public database for complete **collections of gene phylogenies** (phylomes). Users can interactively explore the evolutionary history of genes through the visualization of …

<p>I asked similar <a href='http://stackoverflow.com/questions/8970737/phylogenetic-tree-comparison'>question in stackoverflow</a>, I didn't get good answer there, So I ask it here.</p> <p>I developed new algorithm for <a href='http://en.wikipedia.org/wiki/Phylogenetic_tree'>phylogenetic …

<p>I need to programmatically create radial phylograms (example: <a href='http://bit.ly/n68PGN'>http://bit.ly/n68PGN</a>). The best available visualization tool for this type of tree is TreeIllustrator. Unfortunately, it is …