Entering edit mode
6.5 years ago
wangzer
•
0
I use Bismark to align and methylation_extractor， then i get the result file--*.deduplicated.sorted.sam
And how do I get the metthylKit(or SMART2) input file like this:
chrBase chr base strand coverage freqC freqT
chr21.9764539 chr21 9764539 R 12 25.00 75.00 chr21.9764513 chr21 9764513 R 12 0.00 100.00 chr21.9820622 chr21 9820622 F 13 0.00 100.00 chr21.9837545 chr21 9837545 F 11 0.00 100.00 chr21.9849022 chr21 9849022 F 124 72.58 27.42
