Cuffmerge SyntaxError: invalid syntax
Hi When I ran Cuffmerge command, I recieved below error. I would be appreciated if you help me, and explain what should I do? Cuffmerge command: cuffmerge -o '/root/Medicago/cuffmerge' --ref-gtf '/root/Medicago/genome/GTF/index.gtf' --min-isoform-fraction 0.1 '/root/Medicago/transcripts/exam1.txt'
The error ; File "/root/cufflinks-2.2.1.Linux_x86_64/cuffmerge", line 95 except getopt.error, msg: ^ SyntaxError: invalid syntax
Thank you so much!
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Kevin Blighe
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vahid.jj2005 •
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vahid.jj2005 •
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Check your Python version with python -V and then take a look here: https://groups.google.com/forum/#!topic/tuxedo-tools-users/egAWEoqONhU
That should help to resolve it.
Kevin
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