Hello! I am using OMA.1.1.2 with the option -c as my parallels jobs error message suggest me to do due to my high number of databases in DB/ folder. My job with -c option output end up with the
job.out
set the "-c" flag). Database conversion successfully finished.
job.error
Bus error (core dumped) $OMA_PATH/bin/omadarwin ...
However, in Cache/DB/ , all my database seems to have the database converted (which were in fact, very fast). Is this a normal error output and I should proceed normally with my parallels jobs? or I am doing something wrong?
PD: a quick parallels jobs seem to be working fine in AllvsAll step, but I want to make sure that I am doing it right.
Thank you for your time,
Best
0 answers
No answers yet.
Log in to answer this question.
-
oma orthology part 2 script
written by kylakell •
-
Local database connection and remote download error using curatedTCGAData
written by robjohn70000
-
OMA core dumped error in a single node/machine
written by andrespara •
-
Unpaired Data with DMRMark
written by lizlitkowski •
-
OMA standalone error
written by pbravakos •
-
Error ruining OMA "OneMachineParallelInfo"
written by dtejadamartinez •
-
OMA standalone, "-c" to just convert the databases AFTER all vs all
written by gusa_10 •
-
Fail job after all vs all : Error, 'unable to ReadProgram on SLURM cluster
written by gusa_10 •
-
OMA -c option Bus error
written by gusa_10 •
-
Error when running OMA on PBS with job array
written by gonzalez.pech.ra •
Hello gusa_10!
We believe that this post does not fit the main topic of this site.
This post does not seem to have bioinformatics relevance.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!
Hi, most likely it finished fine. if the file Cache/conversion.done exists, the conversion step finished fine. Best wishes Adrian