How to extract W chromosome sequences from short reads data
Dear all,
I am trying to extract W-linked fragments from a re-sequenced avian individual, which has paired-end shord reads data.I have no clue about how to do this, any suggestions will help a lot!
Thanks all, best regards!
Dezhi
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If the genome sequence is available (is this Chicken) then align your data to it. Extract reads mapping to W (?) chromosome from the alignment file.