Thanks! I will try blastn
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Blast method to use for blasting genes against a transcriptome
Hi,
I have a transcriptome assembly of a non-model organism for which I created a custom database using makeblastdb. I have the cDNA sequences of some of the genes I need to align with the transcriptome to find similar sequences. What blast strategy should I use for this? tblastn, blastx or simply blastn?
Thanks
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GenoMax
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