I have RNA seq differential expression data for which I want to generate coexpression network. I have fold changes for RNA seq data and I want to generate the coexpression network in minimal time.
•
written
by
kanika.arora.2089 •
Here's a list of tools that perform Co-Expression analysis. Note that you're unlikely to be able to do this from a differential expression table alone. Popular tools such as WGCNA require normalised expression data and at least 20 samples for results to be meaningful.
A bit of clarification. While doing WGCNA or any other co-expression network, do we have to use the expression values for both the conditions of only a single condition?
Log in to answer this question.
