Hi, Biostars.

First of all, I have assembled data from a RNA-Seq experiment. I aligned the reads back to the contigs with BWA and generated a count table with featureCounts. I used FragGeneScan to predict the ORFs on my contigs and annotated my ORFs blasting them against the RefSeq database. Now, i loaded the blast output into MEGAN but i don't know how, or if it's even possible, to import my count table to be able to compare my samples.

Any help or idea would be appreciated, thank you!