Closed:CuteVariant : A GUI to filter VCF file

Question

[sacha]

Hi,

Let me show you my new application in development: CuteVariant.
This a Qt C++/GUI application to filter and display VCF file. Actually this is an alpha preview. I didn't publish any release but the source code is avaible.
If you know snpSift and variant-tools, I mixed features comming from both.

 Feature:

• Load raw VCF or annotated VCF file ( tested with snpSift and VEP )
• Parse the VCF file and save datas into SQLITE database
• Select annotation and genotype columns datas
• Filter with a condition tree
• Store Views
• Sort & group variants ( by transcript .. )
• Type your own query using a "variant query language" ( looks like sql / snpSift export)

 Next Feature comming soon :

• Set operation (child - (father & mother))
• Open variant with custom http query ( IGV, varsome, UCSC ... )
• Statistics charts
• And many more ...

Feel free to suggest any ideas. You can find the code on github
You can talk with us on gitter

Video preview on Youtube ==> https://youtu.be/h8sSQa-WSmI