how to get IS query (Fasta) for ISmapper
Dear Colleague
Dear Colleague I'm using the ISmapper software to search for insertions sequences (IS) in a bacterial genome. This software requires as input 1- short read data in fastq format (can be gzipped) 2- IS query / queries of interest in fasta / multifasta format 3- reference genome
I have not yet IS query, my question: how can I get a fatsa file containing all bacterial IS
Thank you
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