How to extract n frames from a GROMACS trajectory
I want to extract n frames in pdb format from say, the last half of a gromacs trajectory. How do I do this?
This is when I have 50000 as my nsteps in the mdp file I used for running grompp, before I did energy minimisation using mdrun. I tried playing around with -b and-e arguments for gmx trjconv but I get and error saying:
...
trn version: GMX_trn_file (single precision)
Last frame -1 time 0.000
WARNING no output, last frame read at t=474
...
For example, I may get this error by running gmx trjconv -f the-em.trr -o the-em.pdb -b 0 -e 400 -dt 10
• 6,289 views
•
link
0 answers
No answers yet.
Log in to answer this question.