Xenopus genome file
Can anyone point me to a Xenopus genome file that can be used to align with Tophat/ Hisat? I genome or tools webpage do not have these genome files. Thanks
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rob.costa1234
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From Ensembl or Xenbase. Make your own indexes.
In Ensembl Which file will be best to use for running Hisat.
If you need corresponding GFF files then getting the genome and GFF3 files from Xenbase may be better. Note: The genome from this source is repeat masked. Not sure if you want tropicalis or laevis.
Ensembl has the topicalis genome file here.