This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Download list of all genes of genome build GRCh38.p0

I need to download the list of all genes with their location of genome build GRCh38.p0. Is there any API for this? I just need the gene names and their location something like this

gene name   chromosome  start  end
  ZNF331        19:53569378-53577953
gene
• 6,427 views • link
updated by aka001 aka001 • written by akij akij

As you are interested in ALL genes, how about trying to download the GTF from the Ensembl FTP release 76, the first with GRCh38?

• 0 views • link
written by Denise CS Denise CS

Hi! Thanks a lot. Is there any API where I can input chromosome regions like 19:53569378-53577953 and get a list of Genes within this region for genome build GRCh38.p0?

• 0 views • link
written by akij akij

1 answer

You can use Ensembl BioMart to do that.

• 0 views • link
written by aka001 aka001

Could you explain how? I don't see the build version I mentioned there

• 0 views • link
written by akij akij

Patches are unlikely to cause major changes in gene information so you should be able to use the current GRCh38 build.

• 0 views • link
written by GenoMax GenoMax

Log in to answer this question.

More posts like this