How can I export multiple trees (in different phyloxml files) to different pdf files?
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Could you please provide more info as to whether you are trying to save the picture of the tree as pdf?
The Archaeopteryx application does this, but one by one. The ETE allow to do this recursively, but isn’t effective (for phyloxml). At the moment I’m using the ETE (in Python), but I'm making a lot of modifications.