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RNA-Seq analysis cummerbund package in R?

RNA-Seq analysis cummerbund package in R?

I performed RNA-Seq data analysis using protocol given in https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334321/.

When I am using cummerbund package, it shows output like this:

CuffSet instance with:

0 samples

0 genes

0 isoforms

0 TSS

0 CDS

0 promoters

0 splicing

0 relCDS

rna-seq r software error tophat cufflinks

How can someone debug the issue with out providing any details that might help to understand whats happening ?

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